bowtie_to_peak_remove_shadows
end_to_end.bowtie_to_peak_remove_shadows(bowtie_file, thresh=12)
Convert bowtie aligned file to peaks after shadow removal.
Parameters
| Name | Type | Description | Default |
|---|---|---|---|
bowtie_file |
required |
Returns
| Type | Description |
|---|---|
| str path to the location of the peaks file (called | after shadow removal). |