rendseq

Overview

rendseq is a python package meant to facilitate analysis of end-enriched RNA sequencing data (Rend-Seq).
To learn more about Rend-Seq - eg what it is, what types of questions it can help you solve and how you can generate your own RendSeq data set please visit the Li lab website, or check out the Li Lab’s 2018 Cell Paper by Lalanne et al.
To learn more about the rendseq package read these docs! ;)

Our package is available on pip. To get started - install our package via pip:

pip install rendseq

Or to get the latest version download and install from our Github:

Clone via SSH (recommended):

git clone git@github.com:gwlilabmit/rendseq.git

or by https:

git clone https://github.com/gwlilabmit/rendseq.git

Then cd into the cloped repo and isntall via pip, either as a regular install:

pip install .

Or if you plan to develop the package as an editable install:

pip install -e .

We welcome collaborators on this project! To get started check out our instructions for how to get started as a contributor.

You can also direct all correspondence about this project to our dedicated mailing list: rendseq at mit dot edu